Function reference
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SScompsTA1.8() - Francis Weighting for compositional data
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SSdeltaMVLN() - Joint Distributions for Stock Status Ratios
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SSdeltaMVLN_old() - Joint Distributions for Stock Status Ratios
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SSdiagsMCMC() - MCMC Joint Distributions
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SSdiagsMCMC_ancient() - MCMC Joint Distributions
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SShcbias() - Mohn's Rho and Forecast Bias
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SSmase() - Mean Absolute Scaled Error
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SSretroComps() - Retrieve Composition Data from Multiple SS Models
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SSrunstest() - Residual Diagnostics Plot
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SSsettingsBratioF() - Get Stock Status Settings
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ssruns_sig3() - Runs Test for Residuals
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SSplotEnsemble() - Model ensemble plots
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SSplotHCxval() - Hindcasting Cross-Validations of Multiple Models
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SSplotJABBAres() - Residual plot
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SSplotKobe() - KOBE phase plot
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SSplotModelcomp() - Compare Multiple SS Model Estimates
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SSplotRetro() - Retrospective-Forecast with One-Step Ahead Hindcasting
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SSplotRunstest() - Residual Diagnostics
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ensemble_plot_index() - Plot Indices
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SSreadMCMC() - Read SS MCMC
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SSrmse() - Function for calculating RMSE
used for
SSplotJABBAres()
Datasets
A simple, cod-like SS model was simulated using ss3sim. The model includes 2 fleets, one fishery and one survey. Catch data is available from year 26 to year 100 (final year of model). An index of abundance is available from the survey fleet for years 62 - 100. No discard data was simulated. Simulated composition data includes length (fleets 1 and 2), age (fleets 1 and 2), and conditional age-at-length (fleet 1).