Generates a Kobe plot or phase plot illustrating the stock status uncertainty over SSB/SSBmsy and F/Fmsy
Usage
SSplotKobe(
kb,
joint = TRUE,
year = NULL,
posterior = c("points", "kernel"),
xlab = expression(SSB/SSB[MSY]),
ylab = expression(F/F[MSY]),
ylim = NULL,
xlim = NULL,
fill = TRUE,
showMedian = TRUE,
legend = TRUE,
legendpos = "right",
legendcex = 0.7,
legendruns = TRUE,
yr.label = TRUE,
yr.int = 5,
verbose = TRUE
)Arguments
- kb
output from SSdeltaMVLN()$kb
- joint
option FALSE shows individual runs
- year
option to choose year for kobe, last year is default
- posterior
visualization of posterior c("points","kernel")
- xlab
graphic parameter
- ylab
graphic parameter
- ylim
graphic parameter
- xlim
graphic parameter
- fill
shows color-coded quadrants
- showMedian
option for median trajectory. TRUE by default
- legend
option for legend. TRUE by default.
- legendpos
legend position
- legendcex
legend size
- legendruns
show legend for run labels
- yr.label
show year along trajectory
- yr.int
year intervals along trajectory
- verbose
Output to R console. Default is TRUE